Similar construction of spicules and shell plates: Implications for the origin of chiton biomineralization.

The hard shells of mollusks are products of biomineralization, a distinctive feature of the Cambrian explosion. Despite our understanding of shell structure and mechanical properties, their origin remains mysterious. In addition to their shell plates, most chitons have calcium deposits on their girdles. However, the similarity of these two mineralized structures still needs to be determined, limiting our comprehension of their origins. In our study, we analyzed the matrix proteins in the spicules of chiton (Acanthopleura loochooana) and compared them with the matrix proteins in the shells of the same species. Proteomics identified 96 unique matrix proteins in spicules. Comparison of biomineralization-related matrix proteins in shell plates and spicules revealed shared proteins, including carbonic anhydrases, tyrosinase-hemocyanin, von Willebrand factor type A, cadherin, and glycine-rich unknown proteins. Based on similarities in key matrix proteins, we propose that spicules and shell plates originated from a common mineralization system in their ancestral lineage, suggesting the existence of a common core or toolkit of matrix proteins among calcifying organisms. SIGNIFICANCE: In this study, we try to understand the types and diversity of matrix proteins in the biomineralization of chiton shell plates and spicules. Through a comparative analysis, we seek insights into the core biomineralization toolkit of ancestral mollusks. To achieve this, we conducted LC-MS/MS and RT-qPCR analyses to identify the types and relative expression levels of matrix proteins in both shell plates and spicules. The analysis revealed 96 matrix proteins in the spicules. A comparison of biomineralization-related matrix proteins in shell plates and spicules from the same species revealed shared proteins including many unknown proteins unique to chitons. Blast searching reveals a universal conservation of these proteins among other chitons. Hence, we propose that spicules and shell plates originated from a common mineralization system in their ancestral lineage. Our work provides a molecular basis for studying biomineralization in polyplacophoran mollusks and understanding biomineralization evolution. In addition, it identifies potential matrix proteins that could be applied to control crystal growth.

Phylogenomic reconstruction of Solenogastres (Mollusca, Aplacophora) informs hypotheses on body size evolution.

Body size is a fundamental characteristic of animals that impacts every aspect of their biology from anatomical complexity to ecology. In Mollusca, Solenogastres has been considered important to understanding the group's early evolution as most morphology-based phylogenetic reconstructions placed it as an early branching molluscan lineage. Under this scenario, molluscs were thought to have evolved from a small, turbellarian-like ancestor and small (i.e., macrofaunal) body size was inferred to be plesiomorphic for Solenogastres. More recently, phylogenomic studies have shown that aplacophorans (Solenogastres + Caudofoveata) form a clade with chitons (Polyplacophora), which is sister to all other molluscs, suggesting a relatively large-bodied (i.e., megafaunal) ancestor for Mollusca. Meanwhile, recent investigations into aplacophoran phylogeny have called the assumption that the last common ancestor of Solenogastres was small-bodied into question, but sampling of meiofaunal species was limited, biasing these studies towards large-bodied taxa and leaving fundamental questions about solenogaster body size evolution unanswered. Here, we supplemented available data with transcriptomes from eight diverse meiofaunal species of Solenogastres and conducted phylogenomic analyses on datasets of up to 949 genes. Maximum likelihood analyses support the meiofaunal family Meiomeniidae as the sister group to all other solenogasters, congruent with earlier ideas of a small-bodied ancestor of Solenogastres. In contrast, Bayesian Inference analyses support the large-bodied family Amphimeniidae as the sister group to all other solenogasters. Investigation of phylogenetic signal by comparing site-wise likelihood scores for the two competing hypotheses support the Meiomeniidae-first topology. In light of these results, we performed ancestral character state reconstruction to explore the implications of both hypotheses on understanding of Solenogaster evolution and review previous hypotheses about body size evolution and its potential consequences for solenogaster biology. Both hypotheses imply that body size evolution has been highly dynamic over the course of solenogaster evolution and that their relatively static body plan has successfully allowed for evolutionary transitions between meio-, macro- and megafaunal size ranges.

A morphological basis for path-dependent evolution of visual systems.

Path dependence influences macroevolutionary predictability by constraining potential outcomes after critical evolutionary junctions. Although it has been demonstrated in laboratory experiments, path dependence is difficult to demonstrate in natural systems because of a lack of independent replicates. Here, we show that two types of distributed visual systems recently evolved twice within chitons, demonstrating rapid and path-dependent evolution of a complex trait. The type of visual system that a chiton lineage can evolve is constrained by the number of openings for sensory nerves in its shell plates. Lineages with more openings evolve visual systems with thousands of eyespots, whereas those with fewer openings evolve visual systems with hundreds of shell eyes. These macroevolutionary outcomes shaped by path dependence are both deterministic and stochastic because possibilities are restricted yet not entirely predictable.

Proteomic analysis of shell matrix proteins from the chiton Acanthopleura loochooana.

Most molluscs have mineralized shells to protect themselves. Although the remarkable mechanical properties of shells have been well-studied, the origin of shells is still elusive. Chitons are unique in molluscs because they are shelly Aculifera which diverged from Conchifera (comprising all the shell-bearing classes of molluscs) in the early pre-Cambrian. We developed a method to extract shell proteins from chiton shell plates (removing embedded soft tissues) and then compared the shell proteome to that of Conchifera groups. Sixteen shell matrix proteins from Acanthopleura loochooana were identified by proteomics, in which Nacrein-like, Pif-like proteins, and protocadherin were found. Additional evidences from shell proteome in another species Chiton densiliratus and comparative sequence alignment in five chitons supported a conserved biomineralization toolkit in chitons. Our findings shed light on the evolution of mineralization in chitons and pose a hypothesis that ancestral molluscs have already evolved biomineralization toolkits, which may facilitate the formation of mineralized shells.

Radula and Shell Microstructure Variations are Congruent with a Molecular Estimate of Shallow-Water Japanese Chitons.

Variations of the radula and shell microstructures in 33 species of Japanese chiton were investigated along with molecular phylogenetic trees. The molecular phylogenetic trees indicated that Chitonida was composed of four clades, of which two clades formed Acanthochitonina and corresponded to Mopalioidea and Cryptoplacoidea, respectively, and the other clades formed Chitonina. In the radula, the shapes of the central and centro-lateral teeth and the petaloid process varied greatly among species or genera and were useful for the identification of particular species or genera. The presence of accessory and petaloid processes and the cusp shape were relatively conserved and useful for recognizing particular genera or even suborders. In the valves, four to six shell layers were found at the section, but the ventral mesostracum was not observed in Acanthochitonina. The shell microstructures in the ventral sublayer of the tegmentum varied at suborder, but those in the other layers were almost constant. The megalaesthete chamber type varied at superfamily and was helpful to identify particular families or superfamilies. The characteristics of the shell layers and shell microstructures appear to be a synapomorphy shared by the members of Acanthochitonina. The classification within Chitonina needs to be reexamined because the variations of the cusp shape and megalaesthete chamber type were relatively large and did not correspond to the current classification. Callochiton formed a sister group with Chitonida and would be equally closely related to Chitonina and Acanthochitonina because of possessing a mosaic of characteristics from both.

A first study on the bioaccumulation of trace metals in Rhyssoplax olivacea (Mediterranean Polyplacophora).

This study investigates, for the first time, the bioaccumulation of trace metals in the chiton Rhyssoplax olivacea. Fe, Cu, Co, Cr and Cd were measured in the shell and soft tissue of R. olivacea sampled in five sites along the Algerian west coast during the cold and hot seasons. Physiological and contamination indices were calculated. The condition index provides information on habitat quality and on R. olivacea reproductive performance and physiological status. The metal/shell-weight index informs on the bioavailability of trace metals. The trace element pollution index is used to assign a global contamination status to the studied sites. The trace element spatial variation index ranks Cd and Cr as trace metals of primary environmental concern based on the overall variability of their levels. An exhaustive review compiling data on trace element bioaccumulation in chitons is performed. The potential use of R. olivacea as bioindicator species is discussed.

Comparative genomics provides insights into the phylogeny and environmental adaptations of Peritrichia (Protista, Ciliophora) - A potential resource for environmental pollution control and bioremediation.

Peritrichs are one of the largest groups within the class Oligohymenophorea. They have a worldwide distribution and a high degree of species diversity. Using the single-cell genome sequencing technique, we obtained the genomes of five sessilid peritrichs. Combining both genomic and transcriptomic data of other publicly available oligohymenophorean ciliates (including the genomes of three sessilid peritrichs from our team's previous study), we conducted a comparative genomics study. Our phylogenomic analyses using both maximum likelihood and Bayesian inference methods recovered the subclass Peritrichia and each of its two orders (Sessilida and Mobilida) as being monophyletic. The non-monophyly of two families (Vorticellidae and Zoothamniidae) was also well supported in both trees. Molecular clock analysis showed that the origin of the subclass Peritrichia was estimated to be during the late Proterozoic. We also analyzed the stop codon usage of 44 oligohymenophoreans. The results showed that most of these species used TGA as the biased stop codon and reassigned the other two stop codons (TAA and TAG) to code amino acids. In addition, we found that the presence of a typical peritrich lorica is a plesiomorphic character of the family Vaginicolidae. Through GO enrichment analysis for group-specific orthogroups of Vaginicolidae, we successfully identified the biological process and molecular function GO terms that were linked with the typical peritrich lorica, including three glycosaminoglycan-related and two chitin-related GO terms. Finally, our enrichment analyses of significantly expanded gene families in Peritrichia found that sessilids were more tolerant to environmental stress (mainly organic matter) than mobilids, suggesting that peritrich lineages (especially sessilids) may have the potential for application in environmental pollution control and bioremediation. Together, the results presented in this study will facilitate wider genome-scale phylogenetic analyses of Peritrichia and deepen the understanding of their unique advantages for environmental pollution control bioremediation.

Redescription of Acanthochitona mahensis Winckworth, 1927 (Polyplacophora, Acanthochitonidae) from Indian Coasts.

A redescription of the chiton species Acanthochitona mahensis collected from the type locality is provided and its holotype is studied. This species has been previously recorded from the coasts of India, Pakistan, Sri Lanka, Eritrea, and Jordan. It is compared with similar species (Acanthochitona biformis, A. jugotenuis, A. intermedia, A. leopoldi, A. penicillata and A. woodwardi). In India, the species has been reported from the mainland and Andaman Islands. New distributional records from the coast of India are also provided.

Chitons of the genus Lepidochitona (Mollusca: Polyplacophora) in the Indian Ocean and ordering of species compositions of some genera of the subfamily Tonicellinae.

The species composition of the genus Lepidochitona in the Indian Ocean and Southeast Atlantic is reviewed. To the so far known three species of this region, two new species are added. One of them, L. africana n. sp., inhabits the area from False Bay on the southern coast of South Africa to Mpenjati, KwaZulu-Natal. The second species, L. pakistana n. sp., is restricted to the shallow waters of Pakistan. In addition, the previously considered rare species L. turtoni is revisited. Lastly, the controversial issues of the taxonomy and composition of the genera Lepidochitona and Cyanoplax, are discussed.

Local adaptation in shell shape traits of a brooding chiton with strong population genomic differentiation.

Comparing divergence in quantitative traits and neutral molecular markers, such as QST-FST comparisons, provides a means to distinguish between natural selection and genetic drift as causes of population differentiation in complex polygenic traits. Onithochiton neglectus (Rochebrune, 1881) is a morphologically variable chiton endemic to New Zealand, with populations distributed over a broad latitudinal environmental gradient. In this species, the morphological variants cluster into 2 geographically separated shell shape groups, and the phenotypic variation in shell shape has been hypothesized to be adaptive. Here, we assessed this hypothesis by comparing neutral genomic differentiation between populations (FST) with an index of phenotypic differentiation (PST). We used 7,562 putatively neutral single-nucleotide polymorphisms (SNPs) across 15 populations and 3 clades of O. neglectus throughout New Zealand to infer FST. PST was calculated from 18 shell shape traits and gave highly variable estimates across populations, clades, and shape groups. By systematically comparing PST with FST, we identified evidence of local adaptation in a number of the O. neglectus shell shape traits. This supports the hypothesis that shell shape could be an adaptive trait, potentially correlated with the ability to live and raft in kelp holdfasts.

Polarization sensitivity and decentralized visual processing in an animal with a distributed visual system.

The marine mollusc Acanthopleura granulata (Mollusca; Polyplacophora) has a distributed visual array composed of hundreds of small image-forming eyes embedded within its eight dorsal shell plates. As in other animals with distributed visual systems, we still have a poor understanding of the visual capabilities of A. granulata and we have yet to learn where and how it processes visual information. Using behavioral trials involving isoluminant looming visual stimuli, we found that A. granulata demonstrates spatial vision with an angular resolution of 6 deg. We also found that A. granulata responds to looming stimuli defined by contrasting angles of linear polarization. To learn where and how A. granulata processes visual information, we traced optic nerves using fluorescent lipophilic dyes. We found that the optic nerves innervate the underlying lateral neuropil, a neural tissue layer that circumnavigates the body. Adjacent optic nerves innervate the lateral neuropil with highly overlapping arborizations, suggesting it is the site of an integrated visuotopic map. Using immunohistochemistry, we found that the lateral neuropil of A. granulata is subdivided into two separate layers. In comparison, we found that a chiton with eyespots (Chiton tuberculatus) and two eyeless chitons (Ischnochiton papillosus and Chaetopleura apiculata) have lateral neuropil that is a singular circular layer without subdivision, findings consistent with previous work on chiton neuroanatomy. Overall, our results suggest that A. granulata effectuates its visually mediated behaviors using a unique processing scheme: it extracts spatial and polarization information using a distributed visual system, and then integrates and processes that information using decentralized neural circuits.

A small collection of rare and new chitons (Mollusca: Polyplacophora) from the Tasmanian Museum and Art Gallery.

A collection of rare, mainly deep-sea species of chitons collected from South Australia, Tasmania and Heard Island has been processed. In the materials there was a second find of Belknapchiton opiparus, which made it possible to significantly supplement the previous descriptions of this species. For the first time, species of genus Stenosemus have been found for Australia and Macquarie Island. Two new species (Leptochiton australis n. sp. and Belknapchiton gowlettholmesae n. sp.) have been described. A high degree of endemism of the faunas of chitons of the family Leptochitonidae of Australia and New Zealand has been confirmed.

Hidden interactions in the intertidal rocky shore: variation in pedal mucus microbiota among marine grazers that feed on epilithic biofilm communities.

In marine ecosystems, most invertebrates possess diverse microbiomes on their external surfaces, such as those found in the pedal mucus of grazing gastropods and chitons that aids displacement on different surfaces. The microbes are then transported around and placed in contact with free-living microbial communities of micro and other macro-organisms, potentially exchanging species and homogenizing microbial composition and structure among grazer hosts. Here, we characterize the microbiota of the pedal mucus of five distantly related mollusk grazers, quantify differences in microbial community structure, mucus protein and carbohydrate content, and, through a simple laboratory experiment, assess their effects on integrated measures of biofilm abundance. Over 665 Amplicon Sequence Variants (ASVs) were found across grazers, with significant differences in abundance and composition among grazer species and epilithic biofilms. The pulmonate limpet Siphonaria lessonii and the periwinkle Echinolittorina peruviana shared similar microbiota. The microbiota of the chiton Chiton granosus, keyhole limpet Fissurella crassa, and scurrinid limpet Scurria araucana differed markedly from one another, and form those of the pulmonate limpet and periwinkle. Flavobacteriaceae (Bacteroidia) and Colwelliaceae (Gammaproteobacteria) were the most common among microbial taxa. Microbial strict specialists were found in only one grazer species. The pedal mucus pH was similar among grazers, but carbohydrate and protein concentrations differed significantly. Yet, differences in mucus composition were not reflected in microbial community structure. Only the pedal mucus of F. crassa and S. lessonii negatively affected the abundance of photosynthetic microorganisms in the biofilm, demonstrating the specificity of the pedal mucus effects on biofilm communities. Thus, the pedal mucus microbiota are distinct among grazer hosts and can affect and interact non-trophically with the epilithic biofilms on which grazers feed, potentially leading to microbial community coalescence mediated by grazer movement. Further studies are needed to unravel the myriad of non-trophic interactions and their reciprocal impacts between macro- and microbial communities.

Intertidal chitons (Mollusca: Polyplacophora) from the rocky coastline of Guerrero, Mxico, with the description of a new species.

Chitons from southern Mxico have been poorly documented hitherto and little is known about the species present in this region. Here we report 12 intertidal to shallow subtidal species in six families and nine genera. Chiton articulatus, Chiton albolineatus, and Ischnochiton muscarius were numerically the most common species, accounting for 29%, 27%, and 26% of individuals found, followed by Chaetopleura lurida (7%) and Stenoplax limaciformis (3%). The remainder of the species obtained were present with between 0.5 and 2% of the total sample. Eight species are distributed along the Tropical Eastern Pacific, and four species (I. muscarius, C. albolineatus, C. articulatus, and Lepidochitona acapulcoensis sp. nov.) are endemic to the Mexican subprovince, distributed from Mazatln to Oaxaca. A morphological comparison of Guerrero chitons with those from several points along the Mexican Tropical Pacific and La Paz Baja California Sur, revealed important variations. Specimens of Chaetopleura lurida from Guerrero contrasts in the valve sculpturing density and arrangement when compared to those from Mazatln and Oaxaca. Callistochiton elenensis from Guerrero exhibits fewer ribs on the head valve and postmucronal area of the tail valve than specimens from La Paz, Baja California Sur. Color pattern differences were identified for Mazatln and Oaxaca specimens of I. muscarius, C. articulatus, and C. albolineatus. Details are presented for the valve tegmentum, girdle elements, and radula for each species. In addition, we herein describe Lepidochitona acapulcoensis sp. nov. as a new species using barcode (cox1) and morphological data.

Micro-cracks and micro-fractures reveal radular tooth architecture and its functional significance in the paludomid gastropod Lavigeria grandis.

Most molluscan taxa forage with their radula, a chitinous membrane with embedded teeth. The teeth are the actual interfaces between the animal and its ingesta and serve as load-transmitting regions. During foraging, these structures have to withstand high stresses without structural failure and without a high degree of wear. Mechanisms contributing to this failure- and wear-resistance were well studied in the heavily mineralized teeth of Polyplacophora and Patellogastropoda, but for the rather chitinous teeth of non-limpet snails, we are confronted with a large gap in data. The work presented here on the paludomid gastropod Lavigeria grandis aims to shed some light on radular tooth composition and its contribution to failure- and wear-prevention in this type of radula. The teeth were fractured and the micro-cracks studied in detail by scanning electron microscopy, revealing layers within the teeth. Two layers of distinct fibre densities and orientations were detected, covered by a thin layer containing high proportions of calcium and silicon, as determined by elemental dispersive X-ray spectroscopy. Our results clearly demonstrate the presence of failure- and wear-prevention mechanisms in snail radulae without the involvement of heavy mineralization-rendering this an example of a highly functional biological lightweight structure. This article is part of the theme issue 'Nanocracks in nature and industry'.

Genome of the lepidopleurid chiton Hanleya hanleyi (Mollusca, Polyplacophora).

Mollusca is the second most species-rich phylum and includes animals as disparate as octopuses, clams, and chitons. Dozens of molluscan genomes are available, but only one representative of the subphylum Aculifera, the sister taxon to all other molluscs, has been sequenced to date, hindering comparative and evolutionary studies. To facilitate evolutionary studies across Mollusca, we sequenced the genome of a second aculiferan mollusc, the lepidopleurid chiton Hanleya hanleyi (Bean 1844), using a hybrid approach combining Oxford Nanopore and Illumina reads. After purging redundant haplotigs and removing contamination from this 1.3% heterozygous genome, we produced a 2.5 Gbp haploid assembly (>4X the size of the other chiton genome sequenced to date) with an N50 of 65.0 Kbp. Despite a fragmented assembly, the genome is rather complete (92.0% of BUSCOs detected; 79.4% complete plus 12.6% fragmented). Remarkably, the genome has the highest repeat content of any molluscan genome reported to date (>66%). Our gene annotation pipeline predicted 69,284 gene models (92.9% of BUSCOs detected; 81.8% complete plus 11.1% fragmented) of which 35,362 were supported by transcriptome and/or protein evidence. Phylogenomic analysis recovered Polyplacophora sister to all other sampled molluscs with maximal support. The Hanleya genome will be a valuable resource for studies of molluscan biology with diverse potential applications ranging from evolutionary and comparative genomics to molecular ecology.

Elemental analyses reveal distinct mineralization patterns in radular teeth of various molluscan taxa.

The molluscan phylum is the second specious animal group with its taxa feeding on a variety of food sources. This is enabled by the radula, a chitinous membrane with embedded teeth, one important autapomorphy. Between species, radulae can vary in their morphology, mechanical, and chemical properties. With regard to chemical composition, some taxa (Polyplacophora and Patellogastropoda) were studied extensively in the past decades, due to their specificity to incorporate high proportions of iron, calcium, and silicon. There is, however, a huge lack of knowledge about radular composition in other taxa. The work presented aims at shedding light on the chemistry by performing energy-dispersive X-ray spectroscopy analyses on 24 molluscan species, thereof two Polyplacophora, two Cephalopoda, and 20 Gastropoda, which was never done before in such a comprehensiveness. The elements and their proportions were documented for 1448 individual, mature teeth and hypotheses about potential biomineralization types were proposed. The presented work additionally comprises a detailed record on past studies about the chemical composition of molluscan teeth, which is an important basis for further investigation of the radular chemistry. The found disparity in elements detected, in their distribution and proportions highlights the diversity of evolutionary solutions, as it depicts multiple biomineralization types present within Mollusca.

Discovery of protein-based natural hydrogel from the girdle of the 'sea cockroach' Chiton articulatus (Chitonida: Chitonidae).

Hydrogels are widely used materials in biomedical, pharmaceutical, cosmetic, and agricultural fields. However, these hydrogels are usually formed synthetically via a long and complicated process involving crosslinking natural polymers. Herein, we describe a natural hydrogel isolated using a 'gentle' acid treatment from the girdle of a chiton species (Chiton articulatus). This novel hydrogel is shown to have a proliferative effect on mouse fibroblast cells (cell line, L929). The swelling capacity of this natural hydrogel was recorded as approximately 1,200% in distilled water, which is within desired levels for hydrogels. Detailed characterizations reveal that the hydrogel consists predominantly (83.93%) of protein. Considering its non-toxicity, proliferative effect and swelling properties, this natural hydrogel is an important discovery for material sciences, with potential for further applications in industry. Whether the girdle has some hydrogel activity in the living animal is unknown, but we speculate that it may enable the animal to better survive extreme environmental conditions by preventing desiccation.

Optimized Sensory Units Integrated in the Chiton Shell.

The first step for animals to interact with external environment is to sense. Unlike vertebrate animals with flexibility, it is challenging for ancient animals that are less flexible especially for mollusca with heavy shells. Chiton, as an example, has eight overlapping shells covering almost the whole body, is known to incorporate sensory units called aesthetes inside the shell. We used micro-computed tomography combined with quantitative image analysis to reveal the optimized shell geometry to resist force and the aesthetes' global distribution at the whole animal levels to facilitate sense from diverse directions both in the seawater and air. Additionally, shell proteomics combined with transcriptome reveals shell matrix proteins responsible for shell construction and potentially sensory function, highlighting unique cadherin-related proteins among mollusca. Together, this multi-level evidence of sensory units in the chiton shell may shed light on the formation of chiton shells and inspire the design of hard armor with sensory function.

A redescription of Leptochiton belknapi Dall, 1878 (Mollusca: Polyplacophora: Leptochitonidae), the type species of the new genus Belknapchiton.

Leptochiton belknapi is revisited, based on a morphological study of more than 340 specimens from different localities in the Pacific Ocean; intraspecific and age variability has been determined and a confirmed distribution of this species has been compiled. The restudy of the species allowed to test the usefulness of a combined character set, which mainly focuses on body size, perinotum coverage, tegmental structures and radula characteristics. By doing so, it turned out that the intraspecific variability is less pronounced than previously assumed. The obtained results and comparison with morphologically similar species, leads to the erection of the new genus Belknapchiton, with Leptochiton belknapi being its type species. The new genus differs from the genus Leptochiton by its elongate oval, large body, rather narrow, sharply pointed perinotum scales with scattered needles, a short radula with a wide central tooth, short first lateral teeth and a strong unidentate (sometimes with denticle-like appendage) head of the second lateral teeth. The vast majority of the 22 species of the new genus inhabit the deep waters of the Pacific Ocean and only B. alveolus (M. Sars MS, Lovén, 1846) is known from the Atlantic Ocean.